PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_538EC4C86.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 174aa    MW: 19813.2 Da    PI: 10.1809
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_538EC4C86.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.6e-1011631163
                           HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                             NR +A rs +RK +++ eLe+kv++L++e ++L  +l  l+   + l++e+
  Traes_5AL_538EC4C86.1 11 LANRQSAARSKERKIKYTGELERKVQTLQTEATTLSAQLTLLQRDTSGLTTEN 63
                           56***************************************999988888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-9465IPR004827Basic-leucine zipper domain
CDDcd147031.42E-19955No hitNo description
PfamPF001703.1E-8963IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.42E-10956No hitNo description
PROSITE profilePS502179.588966IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-10960No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
FRIIVCLCRI LANRQSAARS KERKIKYTGE LERKVQTLQT EATTLSAQLT LLQRDTSGLT  60
TENRELKLRL QSMEEQAKLR DALNDALREE VQRLKIAAGQ APNMNGSQFN GGFQQIPSYF  120
SQQHQRQRQQ QQQQQMAYIG GHQAQRHHPN HHQSPSNGGQ SLSGLSLDDS MDFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3726161e-173AK372616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3007C09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578876.16e-92PREDICTED: transcription factor VIP1-like
SwissprotQ6S4P41e-46RF2B_ORYSJ; Transcription factor RF2b
TrEMBLW5EX691e-125W5EX69_WHEAT; Uncharacterized protein
STRINGBRADI4G41890.12e-91(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19253892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.12e-33VIRE2-interacting protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]